Latest posts tagged with #SlideseqV2 on Bluesky
CARD
Conditional AutoRegressive-based cell-type Deconvolution #SpatialTranscriptomics
Work on #Visium ST #SlideseqV2
Gaussian kernel to model #SpatialCorrelation
Impute cell type & gene info at unmeasured locations
#NatureBiotech 2022
www.nature.com/articles/s41...
Correcting #BatchEffect for #SpatialTranscriptomics
#PRECAST
Integrating spatial data #Visium, ST, #SlideseqV2 from different slides/subjects
Housekeeping gene-based
vs #Harmony #SeuratV3
1⃣Data integration
2⃣Aligned embeddings
3⃣Spatial clustering
#NatureComms 2023
www.nature.com/articles/s41...
Benchmarking sequencing-based #SpatialTranscriptomic methods
#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq
Different ST methods yield inconsistent cell-cell communication results by #CellChat #CellPhoneDB
bioRxiv 2023
www.biorxiv.org/content/10.1...
