#PlantTranscriptomics

Marc Somssich

@somssich.bsky.social

9 months ago

Frontiers | Incorporating gene expression and environment for genomic prediction in wheat

📜 Incorporating gene expression and environment for genomic prediction in wheat

🧑‍🔬 Jia Liu, Shannon Dillon, et al.

📔 Frontiers in Plant Science

🔗 www.frontiersin.org/articles/10....

#️⃣ #PlantScience #Wheat #Cereals #PlantGenomics #PlantTranscriptomics #PlantEnvironment

Marc Somssich

@somssich.bsky.social

1 year ago

📜 Investigating biological nitrogen fixation via single-cell transcriptomics

🧑‍🔬 Wendell J Pereira, @jeanmichelane.bsky.social, Matias Kirst, et al.

📔 @jxbotany.bsky.social

🔗 academic.oup.com/jxb/advance-...

#️⃣ #PlantScience #PlantSymbiosis #NitrogenFixation #Nodulation #PlantTranscriptomics

Marc Somssich

@somssich.bsky.social

1 year ago

Transcriptome analysis reveals role of transcription factor WRKY70 in early N-hydroxy-pipecolic acid signaling WRKY transcription factors partially independent of salicylic acid shape the early N-hydroxy-pipecolic acid transcriptional profile.

📜 Transcriptome analysis reveals role of transcription factor WRKY70 in early N-hydroxy-pipecolic acid signaling

🧑‍🔬 Jessica Foret, Mary Beth Mudgett, et al.

📔 Plant Physiology

🔗 academic.oup.com/plphys/advan...

#️⃣ #PlantScience #PlantImmunity #PlantTranscriptomics

Marc Somssich

@somssich.bsky.social

1 year ago

Next-generation mapping of the salicylic acid signaling hub and transcriptional cascade For over 60 years, salicylic acid (SA) has been known as a plant immune signal required for basal and systemic acquired resistance (SAR). SA activates…

📜 Next-generation mapping of the salicylic acid signaling hub and transcriptional cascade

🧑‍🔬 Jordan Powers, Xinnian Dong, et al.

📔 Molecular Plant

🔗 www.sciencedirect.com/science/arti...

#️⃣ #PlantScience #Phytohormones #PlantImmunity #PlantTranscriptomics

Marc Somssich

@somssich.bsky.social

1 year ago

The transcriptome landscape of developing barley seeds A transcriptomic atlas for developing barley seeds provides in-depth insight into the gene regulation in embryo, endosperm, and seed maternal tissues.

📜 The transcriptome landscape of developing barley seeds

🧑‍🔬 Martin Kovacik, Anna Nowicka, @simonrdg.bsky.social, Ales Pecinka, et al.

📔 The Plant Cell

🔗 academic.oup.com/plcell/advan...

#️⃣ #PlantScience #CropScience #Cereals #Barley #PlantTranscriptomics #Agronomy #PlantGenomics

Marc Somssich

@somssich.bsky.social

1 year ago

Lost in space: what single-cell RNA sequencing cannot tell you Plant scientists are rapidly integrating single-cell RNA sequencing (scRNA-seq) into their workflows. Maximizing the potential of scRNA-seq requires a…

📜 Lost in space: what single-cell RNA sequencing cannot tell you

🧑‍🔬 Kelvin Adema, Wouter Kohlen, et al.

📔 Trends in Plant Science

🔗 www.sciencedirect.com/science/arti...

#️⃣ #PlantScience #PlantGenomics #PlantTranscriptomics #SingleCell

Marc Somssich

@somssich.bsky.social

2 years ago

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcript... Abstract. Single-cell and single-nucleus RNA-sequencing (scRNA-seq and snRNA-seq) technologies capture the expression of plant genes at an unprecedented resolut

📜 Best practices for the execution, analysis, and data storage of plant single- cell/nucleus transcriptomics

🧑‍🔬 Carolin Grones, Marc Libault, Bert De Rybel, et al.

📔 The Plant Cell

🔗 academic.oup.com/plcell/advan...

#️⃣ (Feeds) #PlantScience #PlantTranscriptomics #PlantSingleCellSeq #DataManagement

Marc Somssich

@somssich.bsky.social

2 years ago

📜 PEO: Plant Expression Omnibus – a comparative transcriptomic database for 103 Archaeplastida

🧑‍🔬 Eugene Koh, Marek Mutwil, et al.

📔 The Plant Journal

🔗 onlinelibrary.wiley.com/doi/10.1111/...

#️⃣ (Feeds) #PlantScience #CoExpression #PlantTranscriptomics #PlantDatabase #PlantGenomics