#SequencingData

Javier Santoyo

@jsantoyo.bsky.social

3 months ago

SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection AbstractMotivation. Modern genomics laboratories generate massive volumes of sequencing data, often resulting in significant storage costs. Genomics storag

SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection. #SequencingData #DataStorage #DuplicateDetection #Genomics #Bioinformatics @bioinfoadv.bsky.social
academic.oup.com/bioinformati...

Javier Santoyo

@jsantoyo.bsky.social

4 months ago

The current landscape and emerging challenges of benchmarking single-cell methods. #SingleCell #SequencingData #Bioinformatics #Genomics #Benchmarking #BriefingsInBioinformatics 🧪🧬 🖥️
academic.oup.com/bib/article/...

European Virus Bioinformatics Center

@evbc.bsky.social

5 months ago

Targeted decontamination of #SequencingData with the #CLEANtool enhances viral #genome analysis accuracy #VirusBioinformatics #BioinformaticsTools #DataQualityControl 🧬🔬
📄https://doi.org/10.1093/nargab/lqaf105
👤EVBC: Marie Lataretu, Sebastian Krautwurst, Mike Marquet, Adrian Viehweger, Martin Hölzer

Javier Santoyo

@jsantoyo.bsky.social

6 months ago

Direct Inference of Haplotypes from Sequencing Data. #Haplotypes #SequencingData #Bioinformatics #Genomics
academic.oup.com/bioinformati...

Javier Santoyo

@jsantoyo.bsky.social

7 months ago

Targeted decontamination of sequencing data with CLEAN. #SequencingData #DataDecontamination #NARgenomicsAndBioinformatics #Bioinformatics #Genomics 🧬 🖥️
academic.oup.com/nargab/artic...

Javier Santoyo

@jsantoyo.bsky.social

7 months ago

Evaluation of sequencing reads at scale using rdeval. #SequencingData #ReadsSummary #Bioinformatics 🧬 🖥️
academic.oup.com/bioinformati...

Javier Santoyo

@jsantoyo.bsky.social

1 year ago

JARVIS3: an efficient encoder for genomic data AbstractMotivation. Large-scale genomic projects grapple with the complex challenge of reducing medium- and long-term storage space and its associated ener

JARVIS3: an efficient encoder for genomic data. #SequencingData #Fasta #Fastq #ReferenceFreeCompression #LosslessCompression #GenomicsData #Bioinformatics 🧬 🖥️
Github: github.com/cobilab/jarv...

academic.oup.com/bioinformati...

Javier Santoyo

@jsantoyo.bsky.social

1 year ago

Source https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae665/60938432/btae665.pdf

Pod5Viewer: a GUI for inspecting raw nanopore sequencing data. #Nanopore #SequencingData #Bioinformatics #Genomics @nanoporetech.com 🧬 🖥️
academic.oup.com/bioinformati...