Latest posts tagged with #compbio on Bluesky
The bottom line: Benchmarking—much like success in life—is not a zero-sum game.
It’s about finding the right tool for the right job, not finding the "one tool to rule them all." ⚔️
What’s your "litmus test" for a trustworthy benchmark?
#Bioinformatics #OpenScience #DataScience #CompBio
Promotional graphic showing a section of figure 5 from the white paper of the cysteine-481 sulfur link to Ibrutinib.
Covalent ligand docking is faster, easier, and more accurate in GOLD. ✔️
Find out what's changed and see example results in this new white paper.
Download it here: ccdc-info.com/4re9FCT
#DrugDiscovery #Pharma #CompChemSky #CompBio
@sishuowang.bsky.social & Meade introduce phyloHessian, using complex mixture substitution models in molecular dating. Empirical analysis of ancient symbiont lineages leads to a revised understanding of their host association origins.
🔗 doi.org/10.1093/molbev/msag039
#evobio #molbio #compbio
#compbio Good read: Virtual cell’ captures most-basic process of life: bacterial division www.nature.com/articles/d41...
Check out recent talk @jsb-ucla.bsky.social gave at Colorado School of Public Health!
#Bioinformatics #FDR #Biostatistics #CompBio #HighThroughputBiology
📢 𝐂𝐚𝐥𝐥 𝐟𝐨𝐫 𝐏𝐚𝐩𝐞𝐫𝐬: 𝐂𝐮𝐫𝐫𝐞𝐧𝐭 𝐁𝐢𝐨𝐢𝐧𝐟𝐨𝐫𝐦𝐚𝐭𝐢𝐜𝐬 🧪
Publish in our Scopus-indexed journal! We offer high visibility and rigorous peer review for the global computational biology community. 🧬
🔗 Submit today: https://bit.ly/4s0XXg1
#Bioinformatics #CompBio #Genomics #DataScience #ScienceSky #AcademicSky
Forget ChatGPT and Gemini.
“We don’t have that kind of error tolerance."
Here's how LJI scientists are building new AI tools to advance medical research: mag.lji.org/fall2025/pro...
#DataScience #CompBio #AI #ChatGPT
Green graphic with yellow and white text reads, "Vascular Contributions to Cognitive Impairment and Dementia (VCID) | 3 Reasons to attend | April 28 – May 1, 2026 | Washington University in St. Louis."
Green graphic with yellow and white text reads, "#1 Opportunities to present talks or posters and develop grantsmanship through expert guidance and real-time feedback."
Green graphic with yellow and white text reads, "#2 Engaging seminars cover molecular approaches, mouse models of ADRD and computational methods, highlighting current research and future directions."
Green graphic with yellow and white text reads, "#3 Travel awards available for trainees to support skill development and career momentum. Apply during registration!"
⏰ Submit an abstract by April 3 to present a talk or poster!
@jacksonlab.bsky.social's workshop brings together researchers in #VascularBiology and #Neurodegeneration to advance work in #AlzheimersDisease and related dementias.
🔜 Register: www.jax.org/education-an...
#NeuroSkyence #CompBio #ADRD
Robbins, Liu & Kelly present RECUR, a method for identifying recurrent amino acid substitutions from multiple sequence alignments that is fast, easy to use, and scalable to thousands of sequences.
🔗 doi.org/10.1093/molbev/msag036
#evobio #molbio #compbio
@dengziqi1991.bsky.social et al. present TreeProfiler, a tool for automated annotation and interactive exploration of hundreds of features along large gene and species trees, with seamless summarization of mapped traits at internal nodes.
🔗 doi.org/10.1093/molb...
#evobio #molbio #compbio
#compbio #metagenomics There was a popular-press paper that indicated NCD might be faster than deep neural nets for classification. In metagenomics, w/ lots of comparisons, they're NOT. And they were only better in superkingdom classification - clear kmer patterns. peerj.com/articles/206...
Martí-Gómez et al. developed gpmap-tools, integrating models for inference, phenotypic imputation, and error estimation from multiplex assays of variant effect data or natural sequences in the presence of genetic interactions.
🔗 doi.org/10.1093/molbev/msag023
#evobio #molbio #compbio
📣 DEADLINE UPDATE: Good news! We’ve extended the Gen² paper submission deadline to:
📅 Feb 8, AoE
We look forward to hearing about your latest research in GenAI in Genomics at @iclr-conf.bsky.social !
🔗 genai-in-genomics.github.io/call_for_pap...
#ICLR2026 #GenAI #CompBio #BioML #Genomics 🧬🧪
@anchieri.bsky.social @cegamorim.bsky.social et al. benchmark the inference of selection with aDNA-like time series datasets, showing that ApproxWF can estimate selection with datasets of ∼100 individuals when selection is strong.
🔗 doi.org/10.1093/gbe/evaf234
#genome #evolution #compbio
MBE | PharaohFUN: phylogenomic analysis for plant protein history and function elucidation PharaohFUN incorporates a homogeneous representative sampling of key species in Viridiplantae, bridging clades that have traditionally been studied separately, thus establishing a comprehensive evolutionary framework to draw conclusions about sequence evolution and function.
@marcosramos99.bsky.social @franromerocampero.bsky.social et al. present PharaohFUN, a web application designed for evolutionary and functional analysis of protein sequences in photosynthetic eukaryotes, leveraging orthology relationships.
🔗 doi.org/10.1093/molbev/msag011
#evobio #molbio #compbio
@arcinstitute.org just announced an AI & Bio fellowship for undergrads!
I'm building a team of 2–3 to apply. My interests are in AI for oncology or genomics. Looking for teammates with deep learning/modeling experience.
If you are interested, send me a DM or reply below.
#SciSky #AIxBio #CompBio
🧬 2026 Internship: Marioni Group @genentech.bsky.social Seeking PhD intern for Deep Learning on large-scale genetic screens (Perturb-seq/Optical).
Focus: ML for single-cell + imaging to decode phenotypes.
📍 SSF (On-site) | 12-wk paid
⚠️ Apply via portal only: 🔗 bit.ly/45P7TQB
#CompBio #AI #Genetics
About me.
I am a first-class honors graduate of Biomedical Laboratory Science, from the University of Ibadan. I specialized in Virology.
My interests are in #AI/ML, #Virology, #Bioinformatics, #CompBio, #Proteins, #RNA and #Immunology. I am currently searching for funded MSc or PhD position.
@proteinmechanic.bsky.social et al. present the web-based Structome-AlignViewer for evaluating structure-aware alignments through spatial mapping of alignment columns to protein structures, and quantitative confidence scoring.
🔗 doi.org/10.1093/gbe/evag004
#genome #evolution #compbio
MBE | MicrobeTrace 2.0: the enhanced visualization multitool for molecular epidemiology and bioinformatics
Shankar et al. present the updated MicrobeTrace 2.0 as a next-generation, interoperable tool for genomic epidemiology and data-driven public health response.
🔗 doi.org/10.1093/molbev/msaf334
#evobio #molbio #compbio
Interested in turning biological data into #discovery?
The #CompBio Scholars Program offers hands-on #research, mentorship, and real-world impact for early-career computational biologists.
Meet the 2025 scholars + apply now: www.stowers.org/gradschool/n...
As teachers we know that math is inaccessible for students, but we don't know exactly why.
Our study aims to understand how student's math confidence impacts their learning performance.
Learn more & participate: peischllab.github.io/MEEW.html
#mathbio #compbio #evolution #ecology
The #CompBio Scholars Program provides a valuable, career-enhancing research and mentoring opportunity for early-career computational biologists and bioinformaticians. Don't miss your chance to apply⬇️
Curious what it's like to be a #CompBio Scholar at the Institute? Find out in this Q&A! ⬇️
Our #CompBio Scholars Program pairs early-career scientists with Stowers Investigators & Tech Center experts. For inaugural Scholar Alejandro Diaz de la Vega Gonzalez, that meant hands-on training, mentorship.
Learn more + apply ➡️ bit.ly/3KgFYBn
Join the AITHYRA-CeMM PhD Open Day tomorrow if you want to join us pushing the boundaries of spatial biology and AI.
cemm.at/phd-open-day...
#PhD #AcademicSky #CompBio #Bioinformatics #MachineLearning
Calling all early-career computational biologists! Check out the #StowersGrad #CompBio Scholars program and apply by the February 9th deadline ⬇️
🚨 If you’re an early-career computational biologist or #bioinformatician ready to grow in a collaborative, world-class #research institute — now is the time to apply to our #CompBio Scholars program.
🔗Learn more + apply: bit.ly/3T0dYCy
In a new GBE Review, @david-peede.bsky.social et al. overview the SMC model and extensions, discuss examples of discoveries made with the help of SMC-based inference, and comment on the assumptions, benefits, and drawbacks of various methods.
🔗 doi.org/10.1093/gbe/...
#genome #evolution #compbio
