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Latest posts tagged with #proteindynamics on Bluesky

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Posts tagged #proteindynamics

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#MolecularDynamics analyses of CLDN15 pore size and charge selectivity. New study from Sarah McGuinness, Le Shen, Fatemeh Khalili-Araghi, Christopher R. Weber and colleagues (University of Chicago): rupress.org/jgp/article/...

#MembraneTransport #Biophysics #ProteinStructure #ProteinDynamics

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Currently wrapping up a project that I inhereted from someone I never met when I started at my current employer. It was in fact a large project with lots of good work and commitment from colleagues. The part that I worked on: #proteindynamics 🧬
Initally I thought, well ...

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🇺🇸 Heading to #Novalix? Learn how confocal fluorescence spectroscopy accelerates induced-proximity drug screening. Meet our US team, Audrey & Jake, to discuss #biophysicalscreening, #molecularglues and #PROTACs, #single-molecule #proteindynamics, and more. Look out for their booth and poster!

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📢 Structural biochemists: do you have beautiful, atomic-resolution static structures, but feel like a piece of the puzzle is missing? Add single-molecule dynamics with smFRET to reveal hidden conformational changes 👉 excitinginstruments.com/resource-lib...

#structuralbiology #proteindynamics

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Correlating Protein Dynamics and Catalytic Activity of a Model Hydrogenase Using Paramagnetic and Biological Nuclear Magnetic Resonance Spectroscopy.
Buchko, Garry W et al.
Paper
Details
#ProteinDynamics #NMR #Hydrogenase

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A critical residue mediates proper assembly and gating of GIRK2 channels. New study from Ha Nguyen, Paul A. Slesinger and colleagues @sinaibrain.bsky.social: rupress.org/jgp/article/...

#Biochemistry #MolecularPharmacology #ProteinStructure #ProteinDynamics #Biophysics #IonChannels

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On the mechanism of K⁺ transport through the inter-subunit tunnel of KdpFABC. New study from Hridya Valia Madapally, Himanshu Khandelia @khandeliagroup.bsky.social and colleagues @sdu.dk: rupress.org/jgp/article/...

#MembraneTransport #ProteinStructure #ProteinDynamics #Biophysics

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Novel binding mode for negative allosteric #NMDA receptor modulators, from James Lotti, Rasmus Clausen @ucph.bsky.social, Kasper Hansen and colleagues @umontana.bsky.social: rupress.org/jgp/article/...

#MolecularPharmacology #ProteinStructure #ProteinDynamics #Biophysics

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📝 Online now - the Feature Review "Protein codes and mobility together shape cellular function and disease" from Henry Kilgore, Shannon Moreno, and Richard Young.

#BiomolecularCondensates #Proteolethargy #MacromolecularCrowding #ProteinDynamics

Read it here 👉 authors.elsevier.com/a/1mB6J3S6Gf...

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Two hours to go! Join @shenk0128.bsky.social and @timcraggs.bsky.social as they dive into Rag GTPase regulation, #proteindynamics, and cutting-edge #singlemolecule science. Can’t make it live? Register to get the recording - us06web.zoom.us/meeting/regi...
#biophysics #lifescience #biophysics

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Nucleotide asymmetry and flexible linker dynamics modulate drug efflux cycle of P-glycoprotein, A computational study. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.064

Nucleotide asymmetry and flexible linker dynamics modulate drug efflux cycle of P-glycoprotein, A computational study. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.064

🔗 Nucleotide asymmetry and flexible linker dynamics modulate drug efflux cycle of P-glycoprotein, A computational study. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...

📚 CSBJ: www.csbj.org

#DrugResistance #StructuralBiology #ProteinDynamics #Biophysics #Pgp #ABCB1

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Integrating AlphaFold pLDDT Scores into CABS-flex for enhanced protein flexibility simulations. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.11.047

Integrating AlphaFold pLDDT Scores into CABS-flex for enhanced protein flexibility simulations. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2024.11.047

🔗 Integrating AlphaFold pLDDT Scores into CABS-flex for enhanced protein flexibility simulations. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...

📚 CSBJ: www.csbj.org

#Biophysics #ProteinDynamics #AlphaFold #CABSflex #StructuralBiology #MolecularModeling

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Proteins in Motion: Static Structures Are Just One Frame | Idées Moléculaires

Proteins aren’t static snapshots—they’re dynamic ensembles driving function ⚡ Let’s think beyond single structures and embrace motion to truly understand biology. What do you think? 🔬 #proteindynamics #molecularmotion

idees.moleculair.es/proteins-in-...

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Contact — Wen Zhu Laboratory Use this space to add a brief description of your project.

Passionate about enzyme structure, function, and dynamics, and applying that knowledge to drug discovery? 💊🧬🧫🧪 We’re recruiting a Postdoc!
Come join us! Apply: wzhulab.com/contact
#PostdocJobs #Biochemistry #Enzymology #Metalloenzymes #ProteinDynamics

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Dynamic energy conversion in protein catalysis: From brownian motion to enzymatic function. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.07.050

Dynamic energy conversion in protein catalysis: From brownian motion to enzymatic function. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.07.050

🔗 Dynamic energy conversion in protein catalysis: From brownian motion to enzymatic function. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...

📚 CSBJ: www.csbj.org

#ProteinDynamics #EnzymaticCatalysis #Biophysics #StructuralBiology #EnzymeEngineering #Biochemistry

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NALCN/Cch1 channelosome subunits originated in early eukaryotes. New study from Adriano Senatore @utoronto.ca and colleagues: rupress.org/jgp/article/...

#Lipids #membranes #MolecularPhysiology #ProteinStructure #ProteinDynamics #CellBiology #Evolution #IonChannels

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Single-molecule measurements in solution expose heterogeneity, rare events, and real-time dynamics without immobilisation, yielding precise kinetic and mechanistic insights. Learn more: excitinginstruments.com?utm_source=b... #proteindynamics #DNAproteininteractions #structuralbiology #biophysics

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Ring flips or tyrosine or phenylalanine require some collective motion to occur. Sometimes called "breathing motion". By comparing ring-flip dynamics in solution, crystals and in an antibody-complex using #NMR, we, thus, get insights into collective motions. #Biophysics #ProteinDynamics

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Excited that we are only two weeks away for our Next Generation Biophysics Symposium 2025. We have a fantastic line-up of speakers. Registration is closing soon. Come in person or view on-line
#Biophysics #SingleMolecule #CryoEM #nmr #proteindynamics

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Protein Dynamics at Different Timescales Unlock Access to Hidden Post-Translational Modification Sites Post-translational modifications (PTMs) alter the proteome in response to intra- and extracellular signals, providing fundamental information processing in development, homeostasis and disease. Here, ...

New preprint with Benjamin Lang, Richard Kriwacki, John Christodoulou, and M. Madan Babu!
www.biorxiv.org/content/10.1...

Protein Dynamics at Different Timescales Unlock Access to Hidden Post-Translational Modification Sites
#bioinformatics #compchem #folding #proteindynamics

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Next up: Sonja Schmid @scisonja.bsky.social - presenting the broad-range dynamics of biomolecules uncovered by DyeCycling🌟! She’s using innovative single-molecule fluorescence & nanopore techniques to peer into protein dynamics. Fascinating! #SingleMolecule #ProteinDynamics #CSSB25

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Next up: Ben Schuler - exploring how intrinsically disordered proteins behave in the crowded, dynamic environment of living cells. 🧬 Combining single-molecule spectroscopy with cellular complexity to decode protein folding and function in real time. #ProteinDynamics #SingleMolecule #CSSB25

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Disruption of a side portal pathway permits closed-state inactivation by BK β subunit N-termini, say Yu Zhou, Xiao-Ming Xia, and Christopher Lingle @washumedicine.bsky.social:‬ rupress.org/jgp/article/...

#Biophysics #ProteinStructure #ProteinDynamics #MolecularPhysiology #IonChannels #BKChannels

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Dynamic lid domain of Chloroflexus aurantiacus Malonyl-CoA reductase controls the reaction #carbonfixation #proteindynamics #proteincrystallography www.sciencedirect.com/science/arti...

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Lipi Thukral | Institute of Genomics and Integrative Biology (CSIR)

We are pleased to welcome Dr. Lipi Thukral (CSIR-IGIB) to the JBSD Editorial Board. Her work in computational protein and lipid dynamics will enrich our journal's scope. #JBSD #ProteinDynamics @lipithukral.bsky.social www.igib.res.in?q=LipiThukral

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We are pleased to welcome Professor T. Michael Sabo (University of Louisville) to the JBSD Editorial Board. His expertise in protein dynamics and NMR spectroscopy will enhance our journal’s focus on biomolecular structure and function. #JBSD #ProteinDynamics #NMR

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#research #proteindynamics #biophysics

Unraveling the Tether: Exploring Representative Protein Linkers and Their Structural and Thermodynamical Properties (Šulc, Vondrášek) – JPhysChem B: doi.org/10.1021/acs....

@iocbprague.bsky.social @czechacademy.bsky.social @sciencecharles.bsky.social

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I had the pleasure of presenting my project at VAAM 2025 in Bochum, Germany.

It was an honor to share my research in such a stimulating and engaging scientific setting.

#VAAM2025 #Microbiology #ProteinDynamics #StructuralBiology #EscherichiaColi #ScienceCommunication #LMU #AdiY

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Enhanced sampling of protein conformational changes via true reaction coordinates from energy relaxation | Nature Communications The bottleneck in enhanced sampling lies in finding collective variables that effectively accelerate protein conformational changes; true reaction coordinates that accurately predict the committor are the well-recognized optimal choice. However, identifying them requires unbiased natural reactive trajectories, which, paradoxically, require effective enhanced sampling. Using the generalized work functional method, we uncover that true reaction coordinates control both conformational changes and energy relaxation, enabling us to compute them from energy relaxation simulations. Biasing true reaction coordinates accelerates conformational changes and ligand dissociation in PDZ2 domain and HIV-1 protease by 105 to 1015-fold. The resulting trajectories follow natural transition pathways, enabling efficient generation of unbiased reactive trajectories. In contrast, biased trajectories from empirical collective variables display non-physical features. Furthermore, our method uses a single prot

Crack the protein code! Using generalized work functional reveals how true reaction coordinates drive changes. Unlock btr sampling! #ProteinDynamics 🔬🔑 PMID:39824807, Nat Commun 2025, @NatureComms https://doi.org/10.1038/s41467-025-55983-y #Medsky #Pharmsky #RNA 🧪

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Enhanced sampling of protein conformational changes via true reaction coordinates from energy relaxation - Nature Communications Enhanced sampling simulations require collective variables that effectively accelerate dynamics. Here the authors show how to identify true reaction coordinates from energy relaxation simulations usin...

Crack the protein code! Using generalized work functional reveals how true reaction coordinates drive changes. Unlock btr sampling! #ProteinDynamics 🔬🔑 PMID:39824807, Nat Commun 2025, @NatureComms doi.org/10.1038/s414...

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