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How single-cell genomics is unmasking the hidden diversity of protists From giant kelp forests to the microscopic parasites in a single drop of water, protists represent the vast bulk of eukaryotic phylogenetic diversity.

Speaking today at #CMINorwich26 with @norwichmicro.bsky.social Dr Sally Warring will be sharing the weird and wonderful world of #protists!

Sally's current research focuses on developing high-throughput #singlecell methods for sequencing protists directly from environmental samples.

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Microscopy image of wheat root harbouring soil fungi, captured by Year in Industry student Poppy.

Microscopy image of wheat root harbouring soil fungi, captured by Year in Industry student Poppy.

Microscopy image of Euglena, taken by Protistologist Sally Warring

Microscopy image of Euglena, taken by Protistologist Sally Warring

A wheat root damaged by the take-all fungus Gaeumannomyces tritici.

A wheat root damaged by the take-all fungus Gaeumannomyces tritici.

#Microbial research at Earlham Institute is applying data-driven biology to reveal the hidden diversity of microbial life—from #protists, soil, and #fungi, to communities in our gut—we're working to deepen our understanding of how these complex dynamics shape our health, food, and environment.

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Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells
#evolution #protists #ProtistsOnSky #MicroSky
@springernature.com
doi.org/10.1186/s129...

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Huge news 🌍🧬
The Protist 10,000 Genomes Project is joining the Earth BioGenome Project.
Protists may represent the majority of eukaryotic diversity — yet only a tiny fraction have reference genomes.
Time to change that. 🚀✨
Learn more 👉 ngdc.cncb.ac.cn/p10k/
#EBP #Protists #Genomics #TreeOfLife

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Discovery and genomics of H2-oxidizing/O2-reducing Deferribacterota ectosymbiotic with #protists in the guts of #termites and a Cryptocercus cockroach
#microbiology #endosymbionts #microbiota #microbiome
@isme-microbes.bsky.social
doi.org/10.1093/isme...

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Soil tillage promotes predatory and phototrophic protists over parasitic protists The widespread practice of tillage, which disturbs soil structure and alters its physical and biological properties, may affect protist diversity and …

New paper out!
Tillage was the main driver of soil protist communities — stronger than fertilizer, with no detectable effect of nitrification inhibitors. #Protists #Agroecology #soilmicrobiome
www.sciencedirect.com/science/arti...

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How single-cell genomics is unmasking the hidden diversity of protists From giant kelp forests to the microscopic parasites in a single drop of water, protists represent the vast bulk of eukaryotic phylogenetic diversity.

Discover how scientists at Earlham Institute are adapting #singlecell methods to decode the complex and fascinating diversity of protists directly from from environmental samples.

🧬🦠🔬

#microbialgenomics #protists

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How single-cell genomics is unmasking the hidden diversity of protists From giant kelp forests to the microscopic parasites in a single drop of water, protists represent the vast bulk of eukaryotic phylogenetic diversity.

From working on the Darwin #TreeofLife project to improving isolation and #sequencing methods, Dr Sally Warring is studying the diversity of #protists from natural environments to generate large-scale data for lineages underrepresented in the tree of life.

#protistsonsky

Read more! ⬇️

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Exploring the microbial "dark matter" just got easier🦠🔬
Most #protists are uncultivated and tiny making electron microscopy a nightmare. A new, low-cost protocol allows single-cell tracking and field prep.
#microbiology #eukaryotes #MicroSky #ProtistsOnSky
doi.org/10.1111/jeu....

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Following up on my last post, here is a glimpse into the culture room, where our protists are now growing and awaiting exploration. Excited to see everything fully operational! As you see, there is still a lot of shelf space to fill - one step at a time. Now back to proposal writing 🫡 #protists

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Extrusomes like mucocysts, trichocysts have a bacteria-viral origin, from a bacteria phage gone wrong. Find out how Protistology chapter 21.2 doi.org/10.1016/B978... -461. #protists #protistsonsky #eukaryogenesis

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Article out about our work on #protists at the Earlham Institute🦠🧬

#protistsonsky
@earlhaminst.bsky.social
@nrpdtp.bsky.social
@norwichmicro.bsky.social

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The molecular lab, culture and microscopy rooms, and bioinformatic server, are now fully set up! I’m very grateful for my new position 🎉 We’re already generating results and insights in Koblenz, and I’m looking forward to the years ahead! Now, I "just" need to get the proposals funded 🫡 #protists

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The Microbiome Within a Microbe: Rethinking Blastocystis Biology onlinelibrary.wiley.com/doi/10.1111/... #protists #microbiome

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Left: schematic evolutionary tree of eukaryotes highlighting the position of apusomonads close to opisthokonts. Right: Simple schematic representation of the cell of apusomonads.

Left: schematic evolutionary tree of eukaryotes highlighting the position of apusomonads close to opisthokonts. Right: Simple schematic representation of the cell of apusomonads.

Discovery of a photophobic response in #Apusomonads reveals insights into Opisthokont origins phys.org/news/2026-02...

New #ISEPpapers! Photophobic response in Podomonas kaiyoae is mediated by coordination of cilia, actin filaments: Aika Shibata et al. www.nature.com/articles/s42...

#Protists

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The Romantic Discovery of Radiolaria in the Ocean
#microbiology #Radiolaria #protists #MicroSky
doi.org/10.1111/jeu....

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Happy to have contributed to the #protists section of this @ergabiodiv.bsky.social whitepaper 👉 From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe onlinelibrary.wiley.com/doi/10.1111/...

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Genetic modification in dinoflagellate algae: Some successes, many failures www.sciencedirect.com/science/arti... #protists

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I've taken quite some sediment samples and it's as if I've been either blind all this time or #foraminifera have suddenly flourished. #sediment #citizenscience #protists #amoeba

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Charting the landscape of cytoskeletal diversity in microbial eukaryotes www.cell.com/cell/fulltex... #protists

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Single-cell phylogenomics identifies major groups of marine eugregarine endosymbionts (Apicomplexa) www.sciencedirect.com/science/arti... #protists #symbionts

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How did the Asgard archaea and proteobacteria form a symbiosis that led to the first eukaryote? The important role of syntrophy. #protists #protistsonsky #archaea #eukaryogenesis
Protistology chapter 16.

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Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae - Nature Communications Protist microbiomes are poorly understood. Here, the authors analysed single protist cells to profile their microbiomes and viromes showing that these tiny eukaryotes serve as environmental hubs for hidden bacterial symbionts and diverse giant viruses.

Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae

#Symbiosis #Protists #GiantViruses

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Call for Applications: PhD and Postdoctoral Scholarships – Slamovits Lab at Dalhousie University

🐟🐚🦪🦐🦀
Seeking candidates for a PhD/postdoc opportunity via IMPACT+ program in protistology+aquaculture in Halifax.

For more info, contact me by Feb 5th or see:

slamo.biochem.dal.ca/call-for-app...

#aquaculture #microsky #marinelife #protistsonsky #microalgae #protists

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Eukan: a fully automated nuclear genome annotation pipeline for less studied and divergent eukaryotes academic.oup.com/nargab/artic... #protists

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Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae - Nature Communications Protist microbiomes are poorly understood. Here, the authors analysed single protist cells to profile their microbiomes and viromes showing that these tiny eukaryotes serve as environmental hubs for hidden bacterial symbionts and diverse giant viruses.

Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae

#Symbiosis #Protists #GiantViruses

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microscopic photos of microbial cells and an evolutionary tree

microscopic photos of microbial cells and an evolutionary tree

New #ISEPpapers! Single-cell #phylogenomics identifies major groups of marine eugregarine endosymbionts (Apicomplexa) www.sciencedirect.com/science/arti...

#protists #microbes #parasites #evolution #phylogeny #symbiosis

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Viral and eukaryotic drivers of prokaryotic and antibiotic resistance gene diversity in wastewater microbiomes - Microbiome Background Antibiotic resistance genes (ARGs) are proliferating in wastewater microbiomes, yet the biotic forces shaping their diversity remain poorly understood. Here, we integrate 14 months of metag...

Who’s really in charge of #wastewater treatment🤔?
Viral infection and protistan predation provide a "top-down" control that structures bacterial communities.
#MicroSky #Protists #Eukaryotes #Viruses #Phages
@microbiomej.bsky.social
link.springer.com/article/10.1...

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electron microscopy picture of a microbial cell with multiple flagella

electron microscopy picture of a microbial cell with multiple flagella

How a parasite gave up sex to find more hosts—and why its victory won't last phys.org/news/2026-01...

Host range expansion of asexual parasite can be explained by loss of adaptions in Muller’s Ratchet www.nature.com/articles/s41...

#Protists #Microbes #Parasites #Giardia #Evolution

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microscopic photos of elongated algal cells under light and fluorescence microscopy

microscopic photos of elongated algal cells under light and fluorescence microscopy

New #ISEPpapers! A genetic transformation system for the heterotrophic diatom #Nitzschia putrida (Bacillariophyceae) onlinelibrary.wiley.com/doi/10.1111/...

#Protists #Algae #Microbes #Diatoms

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