#BatchEffect

Hao Yin

@haoyin.bsky.social

8 months ago

Quantifying #BatchEffect for individual genes in single-cell omics data

Removing top highly batch-sensitive genes for #BatchEffectCorrection🧐

#NatComputSci 2025
www.nature.com/articles/s43...

Preprint
www.researchsquare.com/article/rs-4...

MIG

@mig-unimelb.bsky.social

9 months ago

MIG Workshop: Managing batch effects in biological studies Lead instructors: Eva Wang Batch effects refer to sources of unwanted variation that are not related to and obscure any factors of interest. Ha...

📢 MIG Workshop: Managing batch effects in biological studies

🔬 Learn how to detect and manage batch effects.
🗓️ Thur, June 5 | ⏰ 9:30am - 12:30pm AEST
📍 Lvl 5 Seminar Room, Kenneth Myer Building (#144)
👩‍🏫 Dr. Eva Wang
🎟️ $25, fully refunded

#Bioinformatics #BatchEffect #Omics #Rstats #UniMelb

Hao Yin

@haoyin.bsky.social

2 years ago

Lamian

Correct #BatchEffect for Differential Pseudotime analysis in multiple scRNAseq samples

Detect changes in trajectory topology, cell density & gene expression

😎Covariate X Differential expression, in addition to pseudotime DE

#NatureComms 2023
www.nature.com/articles/s41...

Hao Yin

@haoyin.bsky.social

2 years ago

Correcting #BatchEffect for #SpatialTranscriptomics
#PRECAST

Integrating spatial data #Visium, ST, #SlideseqV2 from different slides/subjects
Housekeeping gene-based

vs #Harmony #SeuratV3
1⃣Data integration
2⃣Aligned embeddings
3⃣Spatial clustering

#NatureComms 2023
www.nature.com/articles/s41...