Latest posts tagged with #SpatialTranscriptomics on Bluesky
We’ve had an amazing week learning about #SpatialTranscriptomics with Tancredi Pentimalli and this fantastic group of participants!
It was a very dynamic & interactive learning environment, & we hope everyone is leaving the course with plenty of new knowledge & ideas to apply in their research. 🚀📊
Dr. Sanja Vickovic in front of imaging technology.
Envision the future of #SpatialTranscriptomics and #DigitalPathology tools in a new article spotlighting IICD Core Member Sanja Vicković and her lab> bit.ly/40o5jOA #CancerResearch #BiomedicalEngineering #Multiomics #ColorectalCancer
SpatioTemporal Omics eneRgIES
STORIES
Learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport
Tunable weights of spatial information
Compute both pseudotime & velocity
#NatMethods 2025
www.nature.com/articles/s41...
We’ve kicked off our 5-day journey on #SpatialTranscriptomics with Tancredi Pentimalli and an amazing international group of attendees!
Excited for an inspiring week of learning and hands-on sessions ahead!
@bioconductor.bsky.social
#SingleCell #Genomics #Bioinformatics #RStats #SpatialOmics
Webinar at EMBL-EBI: Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions. 18 March 2026. 14:30-15:30 GMT. Speaker (with headshot): Koen Rademaker, Wellcome Sanger Institute
Join us next week for the fifth #webinar in our
#SpatialTranscriptomics series: Koen Rademaker will present the talk "Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions".
Registration is free but essential: www.ebi.ac.uk/training/eve...
🖥️🧬
The framework reveals hidden tissue heterogeneity and is a powerful approach to high-resolution analysis in tumor and brain research.
#PKUResearch #PekingUniversity #AcademicSky #SpatialTranscriptomics #Genomics #Bioinformatics #ComputationalBiology @natcellbio.nature.com
#SpatialTranscriptomics
Optimizing Xenium In Situ data utility by quality assessment & best-practice analysis workflows
Must-read for Xenium user🔥
👉Segmentation
👉Spatially variable feature selection
👉Imputation
👉Spatial domain identification
#NatMethods 2025
www.nature.com/articles/s41...
Spatial transcriptomics is transforming tissue biology 🔬
Free webinar: 📅 March 31, 2026 | 10:00 AM BST
Learn fundamentals of 10x Genomics Visium HD, applications, sample prep best practices & data analysis.
Register here: tinyurl.com/zu8n4zr3
#SpatialTranscriptomics #Genomics #NGS #10xGenomics
Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...
Webinar at EMBL-EBI. Interactive visualisation of spatial transcriptomic data. 11 March 2026, 14:30-15:30 GMT. Speaker (with headshot): Michele Bortolomeazzi, DKFZ
Join us next week for the fourth #webinar in our
#SpatialTranscriptomics series, where we will talk about how to visualise spatial transcriptomics data using napari and Vitessce.
Registration is free but essential: www.ebi.ac.uk/training/eve...
🖥️🧬
🚨3-year Postdoc Position @halloulab.bsky.social (Kennedy Institute, Oxford) - on Spatial Biology & Bioinformatics of Fibrosis🚨
An exciting project combining #SpatialTranscriptomics & #Mechanobiology👇:
shorturl.at/LLS5r
Deadline: 16 March - Please RT 📢!
@kiroxford.bsky.social @ox.ac.uk
Postdoc researcher Sonia Fonseca in the single-cell labs at EI demonstrating our Vizgen MERSCOPE spatial platform
#Spatialtranscriptomics is a powerful tool to analyse gene expression at a cellular level, with increasing studies in multiple systems.
But traditional histology techniques can focus on the morphology of a sample, often without consideration of maintaining high-quality RNA for secondary analysis.
And earlier this year, scientists from Earlham Institute and @johninnescentre.bsky.social published a study using #spatialtranscriptomics to map the expression of 200 genes across four stages of wheat development, revealing new insights as to how the wheat spike forms.
#spatial #genomics
📄 Key paper on single cell RNA sequencing and spatial transcriptomics in fetal intestine:
www.sciencedirect.com/science/arti...
#WIMMSpotlight #WIMMCommunity #PaediatricResearch #IntestinalImmunology #SpatialTranscriptomics #SingleCellGenomics #RareDiseaseResearch #MRCWIMM
Earlier this month at CSI Science Exchange, we welcomed Dr. Norbert Tay for a research sharing session titled “Understanding Merkel Cell Carcinoma with Spatial Transcriptomics.” He is a Postdoctoral Fellow at @uofmichigan.bsky.social.
#cancerresearch #spatialtranscriptomics #merkelcellcarcinoma
Next #DukeSCIRIP seminar is March 4th 12-1pm online or in MSRBIII!
Join us for talks on ongoing research in #SpatialTranscriptomics and #SingleCell at Duke, this month from the Ji lab and #DukeMGC🧬
For more info or to join virtually, please visit dmpi.duke.edu/duke-single-...
This study maps spatio-temporal gene interactions during #amyloidβ accumulation using #SpatialTranscriptomics, uncovering ligand–receptor dynamics and transcriptional networks of #AlzheimersDisease etiology. @tulanemedicine.bsky.social
#OpenAccess: doi.org/10.1016/j.ge...
Work from the #DukeMGC will be on display at #AGBT2026:
Tuesday 1:30-3:30, poster #401
Wednesday 4:45-6:15, poster #472
Come find us to chat about our data! 🧬
#AGBT #SpatialTranscriptomics #SingleCell #Benchmarking #LongReadSequencing
New research from Jim Whelan's lab and @lewseylab.bsky.social uses @10xgenomics.bsky.social single-cell and Xenium spatial transcriptomics to crack open mitochondrial stress signaling in plants.
#Xenium #10xGenomics #SpatialTranscriptomics #PlantScience
Adrian and Soni hosted a seminar on single-cell and spatial transcriptomics on 16 Feb 2026 at Hannover Medical School, Germany, sharing how these technologies advance genomics and translational research.
#SingleCell #SpatialTranscriptomics #Genomics #NGS #LifeSciences #Novogene
Explore cellular heterogeneity with Novogene's webinar Uncovering Cellular Complexity with Spatial & Single-Cell Transcriptomics. Learn how to integrate spatial & scRNA-seq using 10x GEM-X for novel insights. #SingleCell #SpatialTranscriptomics https://bit.ly/4jc0yyo
#SpatialTranscriptomics
Fibroblasts orchestrate spatial neuroimmune response in 🐭Stroke
Trancranial 4-OHT to label Col1a2-CreER+ fibroblast in dura mater, not leptomeninges/perivascular zone
Fibroblast Tgfbr2 KO
Myeloid Tgfb1 KO
Fibroblast Cxcl12 KO
#Nature 2025
www.nature.com/articles/s41...
Unlocking tissue secrets! ✨ New tool ‘ovrlpy’ reveals hidden folds in cells, fixing errors in vital research. See tissues like never before! 🔬 #SpatialTranscriptomics
Source: phys.org/news/2026-02-software-to...
Cell type-specific responses to #Dapagliflozin in Diabetic arterial wall of db/db🐭
Take a look at this powerful multimodal single-cell dataset
scRNA-seq scATAC-seq Xenium (479 genes) #SpatialTranscriptomics
n=8🐭/group
Rama Natarajan lab #ATVB 2026
www.ahajournals.org/doi/10.1161/...
Seats are filling fast for #SpatialTranscriptomics with R/ @bioconductor.bsky.social (9–13 March)! 🚀
Join this 5-day online course to learn state-of-the-art spatial omics analysis with theory, hands-on labs & a hackathon.
www.physalia-courses.org/courses-work...
Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...
DeepSpaceDB
genomics.virus.kyoto-u.ac.jp/deepspacedb/
>2k #SpatialTranscriptomics Visium samples
👉Interactive, downloadable data analysis
👉Cross-sample/Cross-study comparison
👉Analyze your own data
👉Database-wide gene/pathway inquiry
#NucAcidRes 2026
academic.oup.com/nar/article/...
New for 2026: We're bringing together expertise from across #NorwichResearchPark for a new workshop on Histology for #SpatialTranscriptomics.
📝 Register your interest to hear more!
➡️ buff.ly/UixDjP5
@johninnescentre.bsky.social @quadraminstitute.bsky.social
@thesainsburylab.bsky.social
#SpatialTranscriptomics
Comprehensive mapping of Oral Squamous Cell Carcinoma tumor progression over a 23-wk time course of🐭+4-NQO
cellSpat➡️ spatially co-localized L-R pairs
pypi.org/project/cell...
Sema4a-Plxnb2
Fgf7-Fgfr1
App-Cd74
@jalees.bsky.social bioRxiv 2025
www.biorxiv.org/content/10.1...
Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM. #SpatialTranscriptomics #Isoforms @natbiotech.nature.com 🧪🧬 🖥️
www.nature.com/articles/s41...
