#scientificdata

BF Francis Ouellette

@bffo.bsky.social

3 months ago

Making genomic data FAIR through effective Data Portals - Scientific Data Genomic data portals collect, annotate, and make data files available to researchers and, increasingly, AI algorithms. They are run by, among others, broad data archive repositories or consortium-spec...

From the @ucscgenomics.bsky.social team in @natureportfolio.nature.com #scientificdata | Making genomic data FAIR through effective Data Portals | #FAIR #OpenScience #Bioinformatics #Genomics 🧬 🖥️ 🧪 🔓 CC/ @ebi.embl.org @mdperry.bsky.social
⬇️
www.nature.com/articles/s41...

Kostas Leptokaropoulos

@kostas-leptokarop.bsky.social

3 months ago

🌍 #Earth, #Ocean & #Atmospheric Scientists
Quick poll: Are you using #scientificdata formats? (#NetCDF, #HDF5, #Zarr, etc.)
✅ Takes only 5' (Required fields) to 15' (Optional fields)!
👉 Link: forms.office.com/Pages/Respon...
Please share, your input helps improve research tools!
#MATLAB #Python

Aut. Stuart Miller 📖✍️🤓

@authorstuartmiller.bsky.social

3 months ago

CDC website changed to contradict scientific conclusion that vaccines don't cause autism The Trump administration has revised a website to contradict the scientific consensus that vaccines don't cause autism.

Maga hates facts & REAL science by qualified experts

"the trump administration has revised a website to contradict the scientific consensus that vaccines don't cause autism."

#Vaccines #Autism #Science #ScientificData

apnews.com/article/cdc-...

La Crónica del Henares

@cronicadelhenares.bsky.social

4 months ago

HISTORIA. El uso de 'Google Maps' para las calzadas romanas revela la vasta extensión de la antigua red historia, calzadas romanas, Google Maps

HISTORIA. Un nuevo estudio revela que la red de calzadas romanas era mucho más extensa de lo que se creía. Usando tecnología similar a #GoogleMaps, se mapearon cerca de 300.000 kilómetros de rutas. www.cronicadelhenares.com/2025/11/hist... #Roma #Historia #Arqueología #ScientificData

Javier Santoyo

@jsantoyo.bsky.social

4 months ago

Gap-free telomere-to-telomere genome assembly of marbled flounder (Pseudopleuronectes yokohamae). #T2T #GenomeAssembly #MarbledFlounderGenome #FlatFishGenomics #ScientificData
www.nature.com/articles/s41...

Mihaela Zavolan

@mihaelazavolan.bsky.social

6 months ago

Multi-omic assessment of mRNA translation dynamics in liver cancer cell lines Scientific Data - Multi-omic assessment of mRNA translation dynamics in liver cancer cell lines

Hey there, #mRNAtranslation buffs! Our latest multi-faceted dataset from liver cancer cell lines is out in #ScientificData: RNA-seq, ribosome run-off/ribo-seq, polysome-seq, pSILAC. rdcu.be/eC86H. Great team effort spearheaded by Asier Gonzalez Sevine and Niels Schlusser. Happy data crunching!

Debra M

@ddmoc.bsky.social

6 months ago

Why is Trump so desperate to blame something for causing Autism?

Why has he latched onto Bobby Kennedy’s mantra “vaccines cause Autism”?

Men over 55 are 4x more likely to have a child with Autism. Trump was 60 when his last son was born.

Vaccines don’t cause Autism!

#ScientificData

IEEE Brain

@ieeebrain.bsky.social

6 months ago

Can #brain computer interfaces ease knee pain? There's new #research over at @nature.com's #ScientificData that shows motor imagery + #DeepLearning boosted #BCI accuracy to 86% in patients with chronic knee #osteoarthritis, opening new doors for lower-limb rehab. Details: go.nature.com/4fOxnBn

Javier Santoyo

@jsantoyo.bsky.social

6 months ago

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair. #GenomeInABottle #GIAB #Sequencing #ScientificData
www.nature.com/articles/s41...

Javier Santoyo

@jsantoyo.bsky.social

6 months ago

The telomere-to-telomere chromosome-scale genome assembly of Acremonium chrysogenum. #FungalGenome #T2T #GenomeAssembly #ScientificData
www.nature.com/articles/s41...

Javier Santoyo

@jsantoyo.bsky.social

6 months ago

Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia - Scientific Data Scientific Data - Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia

Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia. #PhasedGenomes #Pangenomes #HumanPopulations #ScientificData 🧬
www.nature.com/articles/s41...

MSK Library

@msklibrary.bsky.social

7 months ago

Disparate data retention standards in biomedical research The acquisition and retention of primary research data is fundamental to the reliability of and public trust in biomedical research. However, researchers are often unaware of or confused by applica...

Disparate data retention standards in biomedical research

#DataRetention #BiomedicalResearch #ResearchStandards #DataManagement #OpenScience #ResearchIntegrity #ScientificData #DataPolicy #LifeSciences #ResearchCompliance #DataGovernance #ResearchEthics

www.tandfonline.com/doi/full/10....

Javier Santoyo

@jsantoyo.bsky.social

7 months ago

A telomere-to-telomere gap-free genome assembly of the endangered humphead wrasse (Cheilinus undulatus). #T2T #GenomeAssembly #HumpheadWrasseGenome #FishGenomics #Genomics #ScientificData
www.nature.com/articles/s41...

Merin Reji Chacko

@merinrejichacko.bsky.social

8 months ago

Thrilled to announce the publication of the trophiCH database: a multi-trophic, species-level #metaweb for #Switzerland🇨🇭

Out now in #ScientificData 📃 www.nature.com/articles/s41...

Want to explore the dataset? 🔍 webapps.wsl.ch/trophiCH/

#OpenData #Ecology #FoodWebs 🌐

1/6

Javier Santoyo

@jsantoyo.bsky.social

8 months ago

Chromosome-level genome assembly of the endangered tree species Ormosia henryi Prain - Scientific Data Scientific Data - Chromosome-level genome assembly of the endangered tree species Ormosia henryi Prain

Chromosome-level genome assembly of the endangered tree species Ormosia henryi Prain. #PlantGenomics #OrmosiaGenome #ChromosomeLevelAssem #ScientificData
www.nature.com/articles/s41...

Javier Santoyo

@jsantoyo.bsky.social

8 months ago

A chromosome-scale genome assembly of the leaf roller, Eumorphobotys obscuralis (Lepidoptera: Pyralidae). #LeafRollerGenome #ChromosomeLevelAssembly #Genomics #ScientificData
www.nature.com/articles/s41...

IEEE Brain

@ieeebrain.bsky.social

8 months ago

Another day, another #dataset. This new open-access #EEG resource dives into encoding speech straight from #brainwaves. It explores phonemes, words, and the messy magic of #coarticulation. Get more details now at @nature.com's #ScientificData: go.nature.com/4lxEcsX
#brain #neurotech #neuroscience

Francis Villatoro

@emulenews.bsky.social

8 months ago

#ScientificData Coronavirus research topics, tracking twenty years of research www.nature.com/articles/s41... "More than eight hundred thousand articles from July 2002 to May 2024. It aggregates and organises global research related to Coronaviruses into thematic clusters."

Alexander Kasprzyk

@amkasprzyk.bsky.social

8 months ago

Databases of quantum periods for Fano manifolds - Scientific Data Fano manifolds are basic building blocks in geometry – they are, in a precise sense, atomic pieces of shapes. The classification of Fano manifolds is therefore an important problem in geometry, which has been open since the 1930s. One can think of this as building a Periodic Table for shapes. A recent breakthrough in Fano classification involves a technique from theoretical physics called Mirror Symmetry. From this perspective, a Fano manifold is encoded by a sequence of integers: the coefficients of a power series called the regularized quantum period. Progress to date has been hindered by the fact that quantum periods require specialist expertise to compute, and descriptions of known Fano manifolds and their regularized quantum periods are incomplete and scattered in the literature. We describe databases of regularized quantum periods for Fano manifolds in dimensions up to four. The databases in dimensions one, two, and three are complete; the database in dimension four will be updated as new four-dimensional Fano manifolds are discovered and new regularized quantum periods computed.

"Databases of quantum periods for Fano manifolds" by Tom Coates and Alexander Kasprzyk. In Nature #ScientificData. #AlgebraicGeometry #BigData #ComputerAlgebra

Javier Santoyo

@jsantoyo.bsky.social

9 months ago

Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing - Scientific Reports Scientific Reports - Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing

Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing. #ShortRead #Sequencer #ScientificData
www.nature.com/articles/s41...

Javier Santoyo

@jsantoyo.bsky.social

9 months ago

The high-quality telomere-to-telomere genome assembly of the earthworm (Amynthas aspergillum). #EarthwormGenome #ChromosomeLevelAssembly #Genomics #ScientificData
www.nature.com/articles/s41...

Land Use development for Climate Adaptation - LUCA at IfaS

@luca-at-ifas.bsky.social

9 months ago

IfaS head of department Frank Wagener underlines the importance of #scientificdata on the effects of agroforestry on the #waterbalance to really support #farmers with #climatechallenges

Andrea Ketchum

@envirolib.bsky.social

10 months ago

Inside the desperate rush to save decades of US scientific data from deletion Swathes of scientific data deletions are sweeping across US government websites – with decades of research at risk. Now, scientists are racing to save their work before it's lost.

Data Science Emergency - Links to US organizations downloading & saving important #ScientificData before Trump Gov deletes it.
www.bbc.com/future/artic...

Pierre Mégevand

@vanmedge.bsky.social

10 months ago

VocalMind: A Stereotactic EEG Dataset for Vocalized, Mimed, and Imagined Speech in Tonal Language - Scientific Data Scientific Data - VocalMind: A Stereotactic EEG Dataset for Vocalized, Mimed, and Imagined Speech in Tonal Language

"VocalMind: A Stereotactic EEG Dataset for Vocalized, Mimed, and Imagined Speech in Tonal Language"

In #ScientificData

#iEEG

www.nature.com/articles/s41...

Alan Lowe

@quantumjot.bsky.social

11 months ago

It's an exciting time at CZI as we work to leverage AI to deepen the scientific community's understanding of human biology. We are hiring for two new leadership positions that will shape and drive our efforts to build virtual cell models...

#AI #virtualcells #scientificdata

Marcello D'Amico

@marcellodamico.bsky.social

11 months ago

Our datapaper "Global Roadkill Data: a dataset on terrestrial vertebrate mortality caused by collision with vehicles" is now online on #ScientificData: nature.com/articles/s41... #RoadEcology @ebdonana.bsky.social

Gaute Hope

@gauteh.bsky.social

11 months ago

I'm looking for what currently exists of clients for accessing geo-spatial data like ocean models stored in object storage? similar to the copernicus marine toolbox, but general. something that works with noaa data? @pangeo.io @xarray.bsky.social @copernicusmarine.bsky.social #scientificdata

RichardJR

@electricbluesfan.bsky.social

1 year ago

5/9
Remaining NOAA staff describe "deep anxiety" as colleagues disappear without notice. With government credit cards frozen, they can't purchase supplies or retrieve instruments deployed at sea. Many are frantically backing up scientific data fearing shutdowns.
#ScientificData #WorkforceImpact

Javier Santoyo

@jsantoyo.bsky.social

1 year ago

Applying the FAIR Principles to computational workflows - Scientific Data Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize access t...

Applying the FAIR Principles to computational workflows. #FAIR #Workflows #Bioinformatics #Genomics #ScientificData 🧬 🖥️
www.nature.com/articles/s41...