#ERGAReads | Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 🧬
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
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#genomeAnnotation
Latest posts tagged with #genomeAnnotation on Bluesky
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Posts tagged #genomeAnnotation
The new diatom Tiberius parameters for unmasked genomes illustrate the gain in accuracy that we often observe compared to parameters for unmasked genomes. #geneprediction #genomeannotation #diatoms #bacillariophyta github.com/Gaius-August...
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We have a new insect parameter set for unmasked genomes and a new fungal parameter set for unmasked genomes. Both deliver accuracy superior to previous models for insects and fungi. #genomeannotation #geneprediction github.com/Gaius-August...
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What we more recently learnt about Tiberius: the models trained on softmasked genomes are very sensitive to how the genome was masked for inference. It seems safer to use models trained on unmasked genomes. #genomeannotation #geneprediction github.com/Gaius-August...
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Interested in #GenomeAssembly & #GenomeAnnotation?
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
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#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics
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💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
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Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023. #mRNA #GenomeAnnotation #EnsemblGenes #Isoforms #BMCgenomics
link.springer.com/article/10.1...
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Join us Nov 18–20 for a Virtual Genome Annotation Workshop! Learn Linux, genome assembly, evidence-based annotation, & evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $500 ($400 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
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💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
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My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
galaxyproject.org/news/2025-07-22-ming-li-...
#UseGalaxy #GalaxyProject #EOSC #Bioinformatics #Genomics #GenomeAssembly #GenomeAnnotation #TrainingProgram (1/2)
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De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. #WheatGenome #Hexaploid #GenomeAnnotation #Transcriptomics #PanGenome @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
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Annotation and functional prediction of RNA helicases in Ustilago maydis
#Ustilago
#Controlofpathogenicdevelopment
#genomeannotation
#RNAhelicases
#smutfungi
imafungus.pensoft.net/article/1517...
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🔹 FAIR metadata for genome annotations: At #BioHackEU25, our #Annotation Committee teams up with the @researchdataall.bsky.social to build a unified framework for collecting, validating & harmonising FAIR metadata.
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
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Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
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MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
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GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
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Great to see our PhD student Fabio Zanarello sharing his work yesterday at LongTREC summer school!
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
@crg.eu
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Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
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🚀 We’ve just kicked off our Introduction to Genome Annotation course with Francesco Cicconardi & Tereza Manousaki!
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
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Join us May 27–29 for a Virtual Genome Annotation Workshop! 🧬 Learn Linux, genome assembly, evidence-based annotation, and evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 Zoom + recording
💰 $500 ($400 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
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The team used the REAT and Minos pipelines developed at the Earlham Institute. This approach has also been applied to annotate additional wheat wild relatives and as part of the @wheatinitiative.bsky.social. #GenomeAnnotation
@gemygk.bsky.social @swarbre.bsky.social
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New release of Ensembl beta is out!!!
Many new annotations available, including new #cattle reference #genome, and 2 #t2t cattle genomes for Tuli and Wagyu breeds! 🐮🐮🐮
#genomeAnnotation #farmedAnimalsGenetics
Go and check it out!!!
beta.ensembl.org
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Source: https://www.biorxiv.org/content/10.1101/2024.12.04.626846v1.full.pdf
OMAnnotator: a novel approach to building an annotated consensus genome sequence. #GenomeAnnotation #Genomics #Bioinformatics 🧬 🖥️ @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
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Rfam 15.0 brings expanded genomes, improved RNA annotations, & new data types for advanced RNA research. Check out the latest updates! 🌟 #Bioinformatics #RNAresearch #GenomeAnnotation
📄 doi.org/10.1093/nar/...
EVBC👤: Sandra Triebel, Manja Marz
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The Pfam protein families database: embracing AI/ML. #Pfam #ProteinDomains #GenomeAnnotation #AI #NAR #Bioinformatics 🧬 🖥️
academic.oup.com/nar/advance-...
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The rice genome annotation project: an updated database for mining the rice genome. #RiceGenome #GenomeAnnotation #NAR 🧬 🖥️
academic.oup.com/nar/advance-...
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Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #SexChromosome #evolution in Wikstroemia, doing #genomics, #GenomeAnnotation, and other #bioinformatics things related to that. I'm an avid […]
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Looking forward to PAG in January! We will bring exciting news about BRAKER with different types and amounts of extrinsic evidence 😀 #genomeannotation #bioinformatics
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Don't miss our upcoming #GenomeAssembly and #GenomeAnnotation course in March with
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...
Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
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