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30 speaking slots are available from the submitted abstracts with at least half dedicated to #ECR and #EMCR speakers. #SingleCell #Genomics #SpatialBiology #SpatialOmics #HumanCellAtlas

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Excited to share currently confirmed speakers for HCA Asia 2026 (lnkd.in/gEQPj3Gk)!

#SingleCell #Genomics #SpatialBiology #SpatialOmics #HumanCellAtlas #SingleCell #transcriptomics #multiomics #Spatial_transcriptomics

@ozsinglecell.bsky.social
@lornegenome.bsky.social

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We’ve kicked off our 5-day journey on #SpatialTranscriptomics with Tancredi Pentimalli and an amazing international group of attendees!

Excited for an inspiring week of learning and hands-on sessions ahead!

@bioconductor.bsky.social
#SingleCell #Genomics #Bioinformatics #RStats #SpatialOmics

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Integrating Ambient Ionization Mass Spectrometry Imaging and Spatial Transcriptomics on the Same Cancer Tissues to Identify RNA–Metabolite Correlations Innovations in spatial omics have advanced disease research, but spatial transcriptomics (ST) and spatial metabolomics remain separate. We present a novel method integrating DESI-MSI spatial metabolo...

DESI+ST simultaneously profiles metabolites, lipids, and mRNA on the same tissue section at matching spatial resolution, eliminating inter-section variability.
#singlecell #MassSpec #Metabolomics #SpatialOmics

onlinelibrary.wiley.com/doi/10.1002/...

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Weekly reads 16/2/26 From ecDNA to epigenomic priming: modeling what averages miss

Weekly reads 16/2/26:
From ecDNA to epigenomic priming: modeling what averages miss
open.substack.com/pub/behindth...

Overall theme: Averages hide, structure reveals.

#SingleCell #SpatialOmics #CancerBiology #ComputationalBiology #MultiOmics #AIinBiology

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Spatial Omics Expert Jasmine Plummer Aims to Broaden Its Reach Jasmine Plummer hopes to make spatial omics more powerful and accessible to the scientific community.

Honored to be featured in The Scientist discussing how we’re working to broaden the reach of spatial omics-to make these powerful technologies more accessible & integrated across research communities.
#SpatialOmics #SingleCell #Multiomics #PrecisionMedicine #CancerResearch #spatialbiology #tissue

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Spatial proteomic image of a lung tumour depicting the immune niche (blue, pink, purple cells) in which CD14+CD4+ T cells reside within the tumour. Tumour cells are coloured in grey.

Spatial proteomic image of a lung tumour depicting the immune niche (blue, pink, purple cells) in which CD14+CD4+ T cells reside within the tumour. Tumour cells are coloured in grey.

Using spatial multi‑omics, WEHI scientists have uncovered an unusual population of CD14⁺CD4⁺ T cells in lung tumours, with higher levels linked to poorer patient outcomes.

New study out in @cp-cellrepmed.bsky.social

👉 www.cell.com/cell-reports...

#Cancer #SpatialOmics #TCells

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Weekly reads 2/2/26 How space, context, and uncertainty reshape cancer and single-cell biology

Weekly reads 2/2/26 :
How space, context, and uncertainty reshape cancer and single-cell biology

open.substack.com/pub/behindth...

Big theme: space + context + mechanism > black-box scale alone.

#SpatialOmics #SingleCell #CancerBiology #TumorMicroenvironment #AIinBiology #Immunology

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Introducing Spatial Sampler, the ‘cheat sheet’ to answering biological questions — Australian BioCommons A new tool is available to help researchers quickly answer important questions about their spatial omics data. This new resource, called Spatial Sampler, collates example R scripts for a variety of co...

Struggling to find workflows that test real experimental questions? Introducing Spatial Sampler - a collection of 'How-To' guides to fast-track your #SpatialOmics analysis. Developed by Sarah Williams (QCIF) to fill the gap between basic QC and complex answers www.biocommons.org.au/news/spatial...

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Weekly reads 26/1/26 When simple representations outperform complex models in biology

Weekly reads 26/1/26:
When Simple Representations Outperform Complex Models in Biology

open.substack.com/pub/behindth...

Big takeaway: biology gets clearer when models respect geometry, hierarchy, and context.

#SingleCell #SpatialOmics #CancerBiology #ComputationalBiology #Genomics

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Spatial Biology Update - DeciBio is developing a new report focused on the real-world perspectives of end users of spatial omics technologies. For more information, contact Rebecca Burnham, PhD #spatialbiology #spatialomics #singlecell #multiomics

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Fusing future science tech with complex genetic data for faster, more precise diagnostics at the Colonial Foundation Diagnostics Centre with The Royal Melbourne Hospital💡🧬🚀

👇
www.wehi.edu.au/news/ending-...

#Diagnostics #ScienceTech #AI #ML #SpatialOmics #InflammatoryDiseases

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Weekly reads 19/1/26 Multimodal integration, interpretability, and robustness in spatial biology

Weekly reads 19/1/26:
Multimodal integration, interpretability, and robustness in spatial biology

open.substack.com/pub/behindth...

Main theme: multimodal data is powerful, but only if it’s aligned, interpretable, and batch-aware.

#SpatialOmics #SingleCell #RegulatoryGenomics #AI

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🧬 Join the next talk with Ralf Jungmann (Max Planck Institute of Biochemistry) on #DNA nanotechnology and #spatialomics.

Register by 11 February 👉 humantechnopole.it/en/training/... #HTseminars @florianjug.bsky.social

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Join the LinkedIn Group "Spatial Biology Pioneers" if you are in the spatial multiomics field #spatialomics #singlecell #multiomics linkedin.com/groups/13906...

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Curious about spatial omics and hands-on multi-omics analysis? 🧬
Explore spatial platforms, learn SPArrOW/Harpy & Cardinal, and discover multi-omics integration strategies at our summer school.
⏰ Deadline to register: 2nd February
#SpatialOmics #SpatialBiology #MultiOmics #Transcriptomic #Proteomics

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Weekly reads 5/1/26 Standardizing, disentangling, and interpreting cells in space

Weekly reads 5/1/26:
Standardizing, disentangling, and interpreting cells in space

open.substack.com/pub/behindth...

#SingleCel #Epigenomics #SpatialBiology #CRISPR #CellCellCommunication #AIinBiology #SpatialOmics

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Epigenetics Review - Spatial omics at the forefront: emerging technologies, analytical innovations, and clinical applications bit.ly/4aY7a39

Linghua Wang reporting in Cancer Cell

#Epigenetics #Review #SpatialOmics
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Discover the breakthrough at epigenometech.com

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That's a wrap on another year in the Gregory lab! 2025 was filled with many hours of hard work in the lab & R Studio, with some fun along the way.

Cheers to 2026 from all of us - we can't wait to show you what we've been working on this year! 🥂🧬🧠

#SingleCell #SpatialOmics

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Sequencing-based Spatial Transcriptomic Platforms – Tamim’s Blog

I have created a poster on sequencing-based spatial transcriptomic technologies and added it to my latest blog post.

Please check it out

#spatialbiology #spatialomics #transcriptomics 🧪

nonlinear-thoughts.netlify.app/posts/sst-pl...

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Single‐Cell and Spatial Multiomics: Applications for Diseases Schematic diagram of different single-cell and spatial multiomics methods to describe the tissue layout of human diseases.

#Review in #MedComm
Single-Cell and Spatial Multiomics: Applications for Diseases doi.org/10.1002/mco2...

#DeepLearning #multiomics #PrecisionMedicine #SingleCellOmics #SpatialOmics

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Advances and Applications of Single-Cell and Spatial Omics Technologies - Call For Papers | Health and Metabolism Dear Colleagues, The journal Health and Metabolism (HM) is pleased to announce an upcoming topic issue entitled “ Advances and Applications of Single-Cell and Spatial Omics Technologies ”. We sincerel...

📢 Call for Papers | Health and Metabolism
Advances and Applications of Single-Cell & Spatial Omics Technologies
Now inviting research on methods, analysis & biomedical applications.
🔗 www.sciltp.com/journals/hm/...

#SingleCell #SpatialOmics #CFP

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Call for Papers | EXO – Beyond the Cell 🧬🧬🧬

New open-access journal on cell-environment interactions: spatial organisation, dynamic communication, cross-scale integration.

Welcoming: Research | Methods | Reviews | Short reports
www.sciexplor.com/exo

#SpatialOmics #CellEnvironment #OpenAccess

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3/3 By leveraging generative AI, our framework significantly improves downstream tasks compared to traditional methods, including better cell type annotation and patient survival prediction. 📉✅

Authors: Minxing Pang, Tarun Kanti Roy, Xiaodong Wu, and Kai Tan.

#GenerativeAI #SpatialOmics #Pathology

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#SpatialOmics

Human #Glioblastoma contains structured & disorganized regions 50:50

Spatial Metaprogram Visium CODEX framework➡️
NDRG1+ hypoxic mesenchymal-like tumor cells as the organizer of 5-layered structure

Angiogenic vs Immunomodulatory microvessels

#Cell 2024
www.cell.com/cell/fulltex...

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Introduction to Processing and Analysis of Spatial Multiplexed Proteomics Data | PR Statistics This 5-day live online course provides a comprehensive introduction to processing and analysing spatial multiplexed proteomics data from imaging platforms such as CODEX, MACSIMA, and CycIF. Participan...

Spatial Multiplexed Proteomics Data course 9 to 13 Feb

An intro to processing fluorescence microscopy taught by Dr Victor Perez Meza, an image analysis specialist focused on artefact correction

prstats.org/course/intro...

#SpatialProteomics #SpatialOmics #ImageAnalysis #Microscopy #Bioinformatics

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Multi-omics strategies for biomarker discovery and application in personalized oncology - Molecular Biomedicine Multi-omics strategies, integrating genomics, transcriptomics, proteomics, and metabolomics, have revolutionized biomarker discovery and enabled novel applications in personalized oncology. Despite ra...

#Review
Multi-omics strategies for biomarker discovery and application in personalized oncology doi.org/10.1186/s435...

#MultiOmics #integration #Database #Cancer #biomarker #PersonalizedMedicine #SingleCell #SpatialOmics

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C-Compass: AI-based software maps proteins and lipids within cells A new tool developed by Helmholtz Munich and the German Center for Diabetes Research and the University of Bonn makes spatial proteomics and lipidomics easier to use—no coding required. C-COMPASS allows scientists to profile where proteins and lipids are located within cells and to track how these patterns change in response to disease or other factors. By removing the need for programming skills, the software makes spatial omics accessible to a wider group of researchers.

✨Unlocking cell secrets!🔬New software, C-COMPASS, maps proteins & lipids *without coding*! See where life happens & how disease changes it.🤯 #SpatialOmics

Source: phys.org/news/2025-12-compass-ai-...

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#Day3 of STOC Plant 2025 is kicking off with the second keynote by @ManuelSpannagl from @MU_CCFI_Biotech @MurdochUni 🇦🇺

Pan-Multi-Omics in Wheat: what can we learn? 🪴 🧬 🌾

#STOCPlant2025 #spatialomics #spatiotemporalOmics #omics #plantscience #PanOmics #Pangenome

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#Day3 of STOC Plant 2025 is kicking off with first keynote from Prof. Robert Henry from @CoEPlantSuccess 🇦🇺

Spatial omics of plants for food security 🪴 🧬 🍱

#STOCPlant2025 #spatialomics #spatiotemporalOmics #omics #plantscience @globalplantgpc.bsky.social @ipes-food.org

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